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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002375
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGTCAATATC

miRNA*
TATTGGCCTGGTTCATTCAGA

mismatches: 2
bulges: 0

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pre-miRNA
TAGCACTAGAGAGTCCTCTTTGATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAA
TATC
TCAGTGCTCTCTCGTCTCTC


dot-bracket secondary structure
....((.(((((((...((..(((((((((.(((((((.((((((.((.............................)).)))))).))))))).)))))
))))
..)).))))))).)).....



SIMILARITIES
miRBase bra-MIR171e: 0.000000000000002

PMRD bna-miR171g: 7e-18

microPC miR171: 2e-42
UniProt no hits

RFAM MIR171_1: 0.000000000008
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046581)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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